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Subsurface Biogeochemical Research Program

Interoperable Design of Extreme-scale Application Software (IDEAS) Watershed Project

Software Ecosystem Improves Scientific Productivity.
The IDEAS project is advancing a scientific software ecosystem comprising BER application codes that can increasingly share components (blue disks) either directly or through common interface libraries (orange boxes). Less mature components and those using simplified representations are shown in gray. The xSDK currently includes scientific libraries, Alquimia (biogeochemistry interface library), and PFLOTRAN (subsurface processes, biogeochemistry engine). The land model interface library (light orange) is targeted for development and later inclusion. [Courtesy Pacific Northwest National Laboratory]

Accelerating watershed science through a community-driven software ecosystem

Principal Investigator: J. David Moulton

Use Case Leads: Xingyuan Chen, Laura Condon, Reed Maxwell, Sergi Molins, Scott Painter, Steven Smith

  • Website:
  • Use Cases:
  • Better Scientific Software Community Portal:
  • Overview brochure: Download PDF
  • Current research abstracts:
    (Open current year's PDF and search by "IDEAS".)
  • Water resources are critically important for energy production, drinking water, agriculture, and ecosystem health, and they are under increasing pressure from growing demand, land-use change, and Earth system change. These stresses on the water supply are largely transmitted through the nation’s watersheds. To enable a robust, predictive understanding of how watersheds function and respond to perturbations as integrated hydro-biogeochemical systems, challenges in multiscale and multiphysics modeling must be overcome. At the same time, disruptive changes in computer architectures are creating significant uncertainty in programming models. This confluence of interdisciplinary challenges drives the Interoperable Design of Extreme-scale Application Software (IDEAS) family of projects to provide community-based approaches to software development. Within this family, the IDEAS–Watersheds project seeks to enhance scientific productivity through an agile approach centered on adapting modern software engineering tools, practices, and processes to build a flexible scientific software ecosystem. By tightly integrating modeling with observations and experiments, the Subsurface Biogeochemical Research (SBR) program, within the Department of Energy’s (DOE) Office of Biological and Environmental Research (BER), advances systems-level under-standing of how watersheds function and translates that understanding into advanced, science-based models of watershed systems.

    Research Activities

    The IDEAS–Watersheds project is organized around six research activities to address important scientific challenges and advance software development methodologies and engagement in the growing community-driven software ecosystem. The first three of these research activities encompass partnership activities, each undertaken jointly with one of SBR’s interdisciplinary Science Focus Areas (SFAs) at Lawrence Berkeley National Laboratory (LBNL), Oak Ridge National Laboratory (ORNL), and Pacific Northwest National Laboratory (PNNL). They address biogeochemical cycling in streams across a wide range of stream orders in disparate climates and land-use conditions.

    LBNL Watershed Function SFA. Perturbations to mountainous watersheds (e.g., floods, drought, and early snowmelt) impact the downstream delivery of water, nutrients, carbon, and trace metals. Currently, no single model can capture all the relevant processes across this domain at fine resolution. The partnership activity with the LBNL SFA aims to develop a multiscale modeling framework that enables consideration of processes at different resolutions within the watershed, including the software tools and workflows required for this framework.

    ORNL Critical Interfaces SFA. Metabolically active transient storage zones (MATSZs), regions surrounding stream channels where the downstream movement of water is delayed, are responsible for a significant portion of carbon, nutrient, and trace metal processing, thus affecting stream biogeochemistry and, ultimately, downstream water quality. The partnership activity with the ORNL SFA is developing a stream corridor modeling framework that allows laboratory-derived understanding of biogeochemical processes occurring in slow-flowing biogeochemical hotspots known as MATSZs to be combined with reach-scale observations. The partnership supports the overarching strategy of a multiscale river network modeling system to represent how MATSZs influence downstream water quality by processing carbon, nutrients, and trace metals.

    PNNL River Corridor SFA. River corridor science is conducted in the context of larger watershed processes that define boundary fluxes and exert other controls on hydrological exchange, including interactions among variable river surface elevation (“stage”), hydromorphic setting, and hydrogeological heterogeneity to determine how those interactions influence river corridor hydro-biogeochemical function. Models must include land-surface and groundwater processes over domains much larger than the river corridor itself. The partnership activity with the PNNL SFA aims to enable fundamental understanding of the hydro-biogeochemical function of dynamic river corridor eco-systems and translate that understanding into predictive, interoperable models across watersheds.

    In addition to these three partnership activities, the IDEAS–Watersheds project encompasses three crosscutting research activities.

    Continental United States (CONUS) Activity. Simulating integrated flow over continental scales at so-called hyper-resolution is an identified grand challenge in computational hydrology. To adequately capture feedbacks among deeper subsurface flow, the land energy budget, and the lower atmosphere, explicit connections must be made between these systems in large-scale models. The CONUS activity supports the development of an integrated hydrological modeling platform of CONUS using the ParFlow-Community Land Model (PF-CLM). The CONUS model bridges across IDEAS–Watersheds study areas and provides a scaling framework from the reach scale up to watershed and regional systems.

    Reaction Network Activity. Reaction networks to describe biogeochemical transformations are a central component of SBR research. This activity bridges across the SFAs and develops process-explicit reaction models for aqueous complexation, surface complexation, mineral dissolution-precipitation, microbially mediated reactions, microbial dynamics, and similar processes.

    Shared Infrastructure Activity. This activity coordinates development of the shared computational infrastructure by creating and advancing existing, multiscale workflow tools and software interfaces for transferring information across scales, customized meshing, and model-data integration, as well as interfaces to couple multiple process-based codes and support code interoperability.

    Scientific and Community Impact

    The IDEAS–Watersheds project has made significant progress in developing a flexible scientific software ecosystem to accelerate scientific discovery and understanding in environmental systems, including completion of open-source licensing and open access to source code repositories. In addition, code teams are adopting agile methodologies and developer workflows, improving sustainability while enhancing capabilities.

    IDEAS-Watersheds Project

    IDEAS-Watersheds Project.
    As of May 2020, nine community datasets have been openly published in DOE’s Environmental Systems Science Data Infrastructure for a Virtual Ecosystem (ESS-DIVE) data repository. Click image to enlarge.

    • DE-FOA-0002482 - Integrated Computational and Data Infrastructure for Scientific Discovery
      Now accepting applications. Letters of Intent Due: April 2, 2021, 5:00 p.m. Eastern Time
    • Office of Science Graduate Student Research (SCGSR) Program 2021 Solicitation 1
      Now accepting applications. Pre-Application Due: May 5, 2021, 5:00 p.m. Eastern Time
    • DE-FOA-0002431 – DOE EPSCoR (Experimental Program to Stimulate Competitive Research) Implementation Grants
      Now accepting applications. Pre-Application Due: December 15, 2020, 5:00 p.m. Eastern Time
    • DE-FOA-0002392-Environmental System Science
      Now accepting applications. Pre-Application Due: Dec. 17, 2020, 5:00 p.m. Eastern Time
    • ASCR Leadership Computing Challenge
      Call for Proposals Open. Pre-Proposals Due: January 4, 2021, 5:00 pm Eastern Time
    • Environmental Research Funding: DoD SERDP
      Now accepting applications.
      • Core Solicitation for Environmental Research and Development Proposals. Pre-Proposals Due: Jan. 7, 2021, 2:00 p.m. Eastern Time.
      • SEED Solicitation. Proposals Due: March 4, 2021, 2:00 p.m. Eastern Time. [11/9]
    • DE-FOA-0002431-Established Program To Stimulate Competitive Research (DOE EPSCoR) Implementation Grants
      Now accepting applications. Pre-Application Due: Dec. 15, 2020, 5:00 p.m. Eastern Time
    • Office of Science Graduate Student Research (SCGSR) Program 2020 Solicitation 2
      Now accepting applications. Pre-Application Due: Nov. 12, 2020, 5:00 p.m. Eastern Time
    • See Also:

    PI-Submitted Research Highlights for Subsurface Biogeochemical Research Program

    Now Featuring

    Open Watershed Science by Design Workshop Report

    October 2019

    EESSD Strategic Plan 2018

    Download PDF

    Subsurface Biogeochemical Research Overview

    November 2019 [PDF]